Persona: Ruiz-Bermejo, Marta
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Centro de Astrobiologia
El Centro de Astrobiología (CAB) es un centro mixto de investigación en astrobiología, dependiente tanto del Instituto Nacional de Técnica Aeroespacial (INTA) como del Consejo Superior de Investigaciones Científicas (CSIC).
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Ruiz-Bermejo
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Marta
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Publicación Restringido Highly efficient melt polymerization of diaminomaleonitrile(Elsevier BV, 2021-01-15) Mas, I.; Hortelano, C.; Ruiz-Bermejo, Marta; de la fuente, Jose Luis; Agencia Estatal de Investigación (AEI); 0000-0002-8059-1335; Unidad de Excelencia Científica María de Maeztu Centro de Astrobiología del Instituto Nacional de Técnica Aeroespacial y CSIC, MDM-2017-0737HCN polymers are of great interest in research on the origin of life and, currently, in materials science because they have shown potential for the design of electrical devices, (photo)catalysts and biomedicine. Herein, calorimetric measurements have successfully described the bulk polymerization of HCN tetramer, diaminomaleonitrile (DAMN). Two series of nonisothermal experiments were carried out by differential scanning calorimetry (DSC), and low-heating rate (β) the thermograms (β ≤ 5 °C/min) indicated that the polymerization is initiated at temperatures lower than the DAMN melting point, ~180 °C; while higher heating rates results in a rapid polymerization reaction, which occurs entirely in the liquid phase. The DSC data were analysed using model-free linear iso-conversional methods to estimate kinetic parameters, such as activation energy, and a suitable kinetic model was proposed for these thermal polymerizations in the melt. A preliminary structural and morphological characterization by means of Fourier transform infrared (FTIR) spectroscopy and scanning electron microscopy (SEM) was also completed. This study demonstrated the autocatalytic, highly efficient and straightforward character of this stimulated thermal polymerization of DAMN and, to the best of our knowledge, describes for the first time a systematic and extended kinetic analysis to gain mechanistic insights into this process. The latter was done through the help of simultaneous thermogravimetry (TG)-DSC and in situ mass spectrometry (MS) technique to investigate the gas products generated during these melt polymerizations. These analyses revealed that deamination and dehydrocyanation processes are two relevant reactions involved in DAMN polymerization mechanism.Publicación Acceso Abierto Characterization of HCN-derived thermal polymer: Implications for chemical evolution(Multidisciplinary Digital Publishing Institute (MDPI), 2020-08-11) Villafañe Barajas, S. A.; Ruiz-Bermejo, Marta; Rayo Pizarroso, P.; Colín García, M.; Consejo Nacional de Ciencia y Tecnología (CONACYT); Colín García, M. https://orcid.org/0000-0002-9193-1761; Unidad de Excelencia Científica María de Maeztu Centro de Astrobiología del Instituto Nacional de Técnica Aeroespacial y CSIC, MDM-2017-0737Hydrogen cyanide (HCN)-derived polymers have been recognized as sources of relevant organic molecules in prebiotic chemistry and material sciences. However, there are considerable gaps in the knowledge regarding the polymeric nature, the physicochemical properties, and the chemical pathways along polymer synthesis. HCN might have played an important role in prebiotic hydrothermal environments; however, only few experiments use cyanide species considering hydrothermal conditions. In this work, we synthesized an HCN-derived thermal polymer simulating an alkaline hydrothermal environment (i.e., HCN (l) 0.15 M, 50 h, 100 degrees C, pH approximately 10) and characterized its chemical structure, thermal behavior, and the hydrolysis effect. Elemental analysis and infrared spectroscopy suggest an important oxidation degree. The thermal behavior indicates that the polymer is more stable compared to other HCN-derived polymers. The mass spectrometric thermal analysis showed the gradual release of several volatile compounds along different thermal steps. The results suggest a complicate macrostructure formed by amide and hydroxyl groups, which are joined to the main reticular chain with conjugated bonds (C=O, N=O, -O-C=N). The hydrolysis treatment showed the pH conditions for the releasing of organics. The study of the synthesis of HCN-derived thermal polymers under feasible primitive hydrothermal conditions is relevant for considering hydrothermal vents as niches of chemical evolution on early Earth.Publicación Acceso Abierto Environmental parameters, and not phylogeny, determine the composition of extracellular polymeric substances in microbial mats from extreme environments(Elsevier, 2019-02-10) Blanco, Yolanda; Rivas, Luis Alfonso; González Toril, Elena; Ruiz-Bermejo, Marta; Moreno Paz, Mercedes; Parro, Víctor; Palacín, Arantxa; Aguilera, Á.; Puente Sánchez, Fernando; Ministerio de Economía y Competitividad (MINECO); Agencia Estatal de Investigación (AEI)The ability to establish biofilms is a key trait for microorganisms growing in extreme environments. The extracellular polymeric substances (EPS) present in biofilms provide not only surface attachment, but also protection against all kinds of environmental stressors, including desiccation, salinity, temperature or heavy metal pollution. The acquisition of suitable biofilm characteristics might thus be an important process mediating the adaptation of microorganisms to novel environmental conditions. In this work we have characterized the EPS of 20 phylogenetically diverse biofilms collected in situ from five contrasting extreme environments, including two geothermal areas (Copahue, Argentina; Seltun, Iceland), two cold areas (Pastoruri glacier, Peru; Byers Peninsula, Antarctica) and one extremely acidic river (Río Tinto, Spain). Biofilms were subjected to biochemical characterization, glycan profiling and immunoprofiling with an antibody microarray. Our results showed that environmental conditions strongly influence biofilm characteristics, with microorganisms from the same environment achieving similar EPS compositions regardless of the phylogeny of their main species. The concentration of some monosaccharides in the EPS could be related to environmental conditions such as temperature or heavy metal toxicity, suggesting that in some cases stress resistance can be mediated by specific sugars. Overall, our results highlight the existence of conserved EPS compositional patterns for each extreme environment, which could in turn be exploited to engineer ecological adaptations in genetically modified microorganisms.Publicación Acceso Abierto A dual perspective on the microwave-assisted synthesis of HCN polymers towards the chemical evolution and design of functional materials(Nature Research Journals, 2020-12-18) Hortal, Lucia; Pérez Fernández, Cristina; de la fuente, Jose Luis; Valles González, M. P.; Mateo Marti, Eva; Ruiz-Bermejo, Marta; Instituto Nacional de Técnica Aeroespacial (INTA); Agencia Estatal de Investigación (AEI); http://dx.doi.org/10.13039/501100011033; http://dx.doi.org/10.13039/501100010687; Unidad de Excelencia Científica María de Maeztu Centro de Astrobiología del Instituto Nacional de Técnica Aeroespacial y CSIC, MDM-2017-0737In this paper, the first study on NH4CN polymerization induced by microwave radiation is described, where a singular kinetic behaviour, especially when this reaction is conducted in the absence of air, is found. As a result, a complex conjugated N-heterocyclic polymer system is obtained, whose properties are very different, and even improved according to morphological features, characterized by their X-ray diffraction patterns and scanning electron microscopy analysis, with respect to those produced under conventional thermal treatment. In addition, a wide variety of relevant bioorganics have been identified, such as amino acids, nucleobases, co-factors, etc., from the synthetized NH4CN polymers. These particular families of polymers are of high interest in the fields of astrobiology and prebiotic chemistry and, more recently, in the development of smart multifunctional materials. From an astrobiological perspective, microwave-driven syntheses may simulate hydrothermal environments, which are considered ideal niches for increasing organic molecular complexity, and eventually as scenarios for an origin of life. From an industrial point of view and for potential applications, a microwave irradiation process leads to a notable decrease in the reaction times, and tune the properties of these new series macromolecular systems. The characteristics found for these materials encourage the development of further systematic research on this alternative HCN polymerization.Publicación Restringido A Comparative Study on HCN Polymers Synthesized by Polymerization of NH4CN or Diaminomaleonitrile in Aqueous Media: New Perspectives for Prebiotic Chemistry and Materials Science(Chemistry Europe: European Chemical Societies Publishing, 2019-08-02) Ruiz-Bermejo, Marta; de la fuente, Jose Luis; Carretero González, J.; García Fernández, L.; Rosa Aguilar, M.; Agencia Estatal de Investigación (AEI); Unidad de Excelencia Científica María de Maeztu Centro de Astrobiología del Instituto Nacional de Técnica Aeroespacial y CSIC, MDM-2017-0737HCN polymers are a group of complex and heterogeneous substances that are widely known in the fields of astrobiology and prebiotic chemistry. In addition, they have recently received considerable attention as potential functional material coatings. However, the real nature and pathways of formation of HCN polymers remain open questions. It is well established that the tuning of macromolecular structures determines the properties and practical applications of a polymeric material. Herein, different synthetic conditions were explored for the production of HCN polymers from NHCN or diaminomaleonitrile in aqueous media with different concentrations of the starting reactants and several reaction times. By using a systematic methodology, both series of polymers were shown to exhibit similar, but not identical, spectroscopic and thermal fingerprints, which resulted in a clear differentiation of their morphological and electrochemical properties. New macrostructures are proposed for HCN polymers, and promising insights are discussed for prebiotic chemistry and materials science on the basis of the experimental results.Publicación Acceso Abierto Multivariate Analysis Applied to Microwave-Driven Cyanide Polymerization: A Statistical View of a Complex System(Multidisciplinary Digital Publishing Institute (MDPI), 2023-01-12) Pérez Fernández, Cristina; González Toril, Elena; Mateo Marti, Eva; Ruiz-Bermejo, Marta; Ministerio de Ciencia e Innovación (MICINN)For the first time, chemometrics was applied to the recently reported microwave-driven cyanide polymerization. Fast, easy, robust, low-cost, and green-solvent processes are characteristic of these types of reactions. These economic and environmental benefits, originally inspired by the constraints imposed by plausible prebiotic synthetic conditions, have taken advantage of the development of a new generation of HCN-derived multifunctional materials. HCN-derived polymers present tunable properties by temperature and reaction time. However, the apparently random behavior observed in the evolution of cyanide polymerizations, assisted by microwave radiation over time at different temperatures, leads us to study this highly complex system using multivariate analytical tools to have a proper view of the system. Two components are sufficient to explain between 84 and 98% of the total variance in the data in all principal component analyses. In addition, two components explain more than 91% of the total variance in the data in the case of principal component analysis for categorical data. These consistent statistical results indicate that microwave-driven polymerization is a more robust process than conventional thermal syntheses but also that plausible prebiotic chemistry in alkaline subaerial environments could be more complex than in the aerial part of these systems, presenting a clear example of the “messy chemistry” approach of interest in the research about the origins of life. In addition, the methodology discussed herein could be useful for the data analysis of extraterrestrial samples and for the design of soft materials, in a feedback view between prebiotic chemistry and materials science.Publicación Restringido Ammonium affects the wet chemical network of HCN: feedback between prebiotic chemistry and materials science(Royal Society of Chemistry, 2023-06-21) de la fuente, Jose Luis; Vega, Jorge; Mateo Marti, Eva; Valles González, M. P.; Ruiz-Bermejo, Marta; Pérez Fernández, Cristina; Instituto Nacional de Técnica Aeroespacial (INTA); Universidad Complutense de Madrid (UCM); Agencia Estatal de Investigación (AEI); Consejo Superior de Investigaciones Científicas (CSIC); Ministerio de Ciencia, Innovación y Universidades (MICINN)Prebiotic chemistry one-pot reactions, such as HCN-derived polymerizations, have been used as stimulating starting points for the generation of new multifunctional materials due to the simplicity of the processes, use of water as solvent, and moderate thermal conditions. Slight experimental variations in this special kind of polymerization tune the final properties of the products. Thus, herein, the influence of NH4Cl on the polymerization kinetics of cyanide under hydrothermal conditions and on the macrostructures and properties of this complex system is explored. The kinetics of the process is consistent with an autocatalytic model, but important variations in the polymerization reaction are observed according to a simple empirical model based on a Hill equation. The differences in the kinetic behaviour against NH4Cl were also revealed when the structural, morphological, thermal, electronic and magnetic properties of the synthesized cyanide polymers were compared, and these properties were evaluated by elemental analysis, FTIR, XPS, UV-vis, and ESR spectroscopies, X-ray diffraction, SEM and thermoanalytical techniques. As a result, this hydrothermal prebiotic polymerization is not only pH dependent, as previously thought, but also ammonium subservient. From this result, a hypothetical reaction mechanism was proposed, which involves the active participation of ammonium cations via formamidine and serves as a remarkable point against previous reports. The results discussed here expand the knowledge on HCN wet chemistry, offer an extended view of the relevant parameters during the simulation of hydrothermal scenarios and describe the production of promising paramagnetic and semiconducting materials inspired by prebiotic chemistry.Publicación Acceso Abierto Detecting Nonvolatile Life- and Nonlife-Derived Organics in a Carbonaceous Chondrite Analogue with a New Multiplex Immunoassay and Its Relevance for Planetary Exploration(Mary Ann Liebert, 2018-08-01) Parro, Víctor; Moreno Paz, Mercedes; Gómez Cifuentes, Ana; Ruiz-Bermejo, Marta; Hofstetter, Oliver; Maquieira, Ángel; Manchado, J. M.; Morais, Sergi; Sephton, Mark A.; Niessner, Reinhard; Knopp, Dietmar; Zorzano, María-Paz; Instituto Nacional de Técnica Aeroespacial (INTA); Ministerio de Economía y Competitividad (MINECO)Potential martian molecular targets include those supplied by meteoritic carbonaceous chondrites such as amino acids and polycyclic aromatic hydrocarbons and true biomarkers stemming from any hypothetical martian biota (organic architectures that can be directly related to once-living organisms). Heat extraction and pyrolysis-based methods currently used in planetary exploration are highly aggressive and very often modify the target molecules, making their identification a cumbersome task. We have developed and validated a mild, nondestructive, multiplex inhibitory microarray immunoassay and demonstrated its implementation in the SOLID (Signs of Life Detector) instrument for simultaneous detection of several nonvolatile life- and nonlife-derived organic molecules relevant in planetary exploration and environmental monitoring. By utilizing a set of highly specific antibodies that recognize D- or L-aromatic amino acids (Phe, Tyr, Trp), benzo[a]pyrene (B[a]P), pentachlorophenol, and sulfone-containing aromatic compounds, respectively, the assay was validated in the SOLID instrument for the analysis of carbon-rich samples used as analogues of the organic material in carbonaceous chondrites or even Mars samples. Most of the antibodies enabled sensitivities at the 1–10 ppb level and some even at the part-per-trillion level. The multiplex immunoassay allowed the detection of B[a]P as well as aromatic sulfones in a water/methanol extract of an Early Cretaceous lignite sample (ca. 140 Ma) representing type IV kerogen. No L- or D-aromatic amino acids were detected, reflecting the advanced diagenetic stage and the fossil nature of the sample. The results demonstrate the ability of the liquid extraction by ultrasonication and the versatility of the multiplex inhibitory immunoassays in the SOLID instrument to discriminate between organic matter derived from life and nonlife processes, an essential step toward life detection outside Earth.Publicación Acceso Abierto Kinetic Study of the Effective Thermal Polymerization of a Prebiotic Monomer: Aminomalononitrile(Multidisciplinary Digital Publishing Institute, 2023-01-17) Hortelano, C.; Ruiz-Bermejo, Marta; de la fuente, Jose Luis; Agencia Estatal de Investigación (AEI); Ministerio de Ciencia e Innovación (MICINN)Publicación Restringido Modelling the kinetics and structural property evolution of a versatile reaction: aqueous HCN polymerization(Royal Society of Chemistry (RSC), 2018-05-29) Fernández, Amparo; Ruiz-Bermejo, Marta; de la fuente, Jose Luis; Ministerio de Economía y Competitividad (MINECO); Instituto Nacional de Técnica Aeroespacial (INTA)The kinetics of the reaction of the synthesis of HCN polymers in aqueous medium at high temperatures have been analysed to ascertain a suitable model for this material, for which it was recently demonstrated that prebiotic chemistry may now be adapted in the development of a new generation of high performance coatings and adhesives with biomedical applications. These experimental conditions were chosen for the simplicity of the reagents, being particularly convenient in regard to potential industrial scale-up of coating technology, where these polymers have revealed an interesting field of application. The kinetics of the precipitation polymerization of HCN in water were studied under isothermal conditions at four different temperatures between 75 °C and 90 °C throughout gravimetric measurements. The use of the Kamal–Sourour autocatalytic kinetic model was proposed, properly describing the overall formation process of this insoluble HCN polymer. All of the kinetic parameters, including reaction orders, kinetic constants and activation energy, were determined for the cross-linking polymerization reaction under study, and a relevant autocatalysis effect was observed. An isoconversion method was also used to analyse the variation of the global activation energy with conversion; and characterization by means of elemental analysis, Fourier transform infrared (FTIR) spectroscopy, and scanning electron microscopy (SEM) was carried out. This study demonstrates the autocatalytic, robust and straightforward character of this heterogeneous aqueous HCN polymerization, and to the best of our knowledge, this report describes the first time that a systematic and extended kinetic analysis has been conducted to obtain a more comprehensive and deeper understanding of this complex reaction, which is of great interest to the origin of life and, currently, to materials science.
